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  5. Als_g31875

Als_g31875


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex & original description: none


Gene families : OG0000667 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000667_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g31875
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Adi_g011378 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Adi_g082290 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Aob_g04122 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Aop_g04362 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Aop_g07392 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Aspi01Gene31869.t1 Aspi01Gene31869 mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Cba_g14245 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.07 OrthoFinder output from all 47 species
Cba_g38766 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Ceric.15G071200.1 Ceric.15G071200 mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Ceric.24G052400.1 Ceric.24G052400 mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Dac_g29514 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Ehy_g30549 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
GSVIVT01030785001 ALY4 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Len_g56770 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Lfl_g02048 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Msp_g07749 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Pir_g05319 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Pir_g09281 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Ppi_g00624 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Sam_g07852 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Sam_g51376 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Solyc10g086400.2.1 Solyc10g086400 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Solyc11g073280.2.1 Solyc11g073280 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Spa_g07185 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Spa_g37959 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.05 OrthoFinder output from all 47 species
Zm00001e009369_P001 Zm00001e009369 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004417 hydroxyethylthiazole kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036297 interstrand cross-link repair IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
CC GO:0043240 Fanconi anaemia nuclear complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 143 211
No external refs found!