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  5. Als_g22688

Als_g22688 (emb2734)


Aliases : emb2734

Description : nucleocytoplasmic import karyopherin *(IMB3) & original description: none


Gene families : OG0001766 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001766_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g22688

Target Alias Description ECC score Gene Family Method Actions
Aev_g11168 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
Als_g38445 emb2734 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28680 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.05 OrthoFinder output from all 47 species
Ceric.17G003600.1 emb2734, Ceric.17G003600 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.06 OrthoFinder output from all 47 species
Ceric.26G014000.1 emb2734, Ceric.26G014000 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001030.13 emb2734 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Dac_g02379 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g04981 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g12588 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os03g49420.1 emb2734, LOC_Os03g49420 IMB3 nucleocytoplasmic import karyopherin 0.03 OrthoFinder output from all 47 species
Len_g16328 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.03 OrthoFinder output from all 47 species
MA_10432351g0030 emb2734 IMB3 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Smo140234 emb2734 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Spa_g12761 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.02 OrthoFinder output from all 47 species
Tin_g21538 emb2734 nucleocytoplasmic import karyopherin *(IMB3) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041389 Importin_rep_6 782 889
IPR000357 HEAT 922 950
IPR041653 Importin_rep_4 282 373
No external refs found!