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  5. Pnu_g11886

Pnu_g11886 (RPS1, ARRPS1)


Aliases : RPS1, ARRPS1

Description : component *(bS1c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0002574 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11886
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00212290 RPS1, ARRPS1,... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT5G30510 RPS1, ARRPS1 ribosomal protein S1 0.05 OrthoFinder output from all 47 species
Adi_g033757 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aev_g03971 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g01963 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g07823 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g32395 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aob_g17787 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g12017 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g41967 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aspi01Gene46819.t1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Azfi_s0030.g024427 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g16776 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g16777 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.32G044800.1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.13 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Cre09.g394750 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Dac_g12960 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g08135 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g07822 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ehy_g01340 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01034940001 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Gb_02217 RPS1, ARRPS1 component psRPS1 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os03g20100.1 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Len_g02246 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g03066 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_694512g0010 RPS1, ARRPS1 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.03 OrthoFinder output from all 47 species
Msp_g22203 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g09544 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g07549 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pir_g10266 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pp3c10_21790V3.1 RPS1, ARRPS1,... ribosomal protein S1 0.01 OrthoFinder output from all 47 species
Ppi_g05695 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g07761 No alias component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g09837 No alias component *(bS1c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Smo271018 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Solyc01g057830.3.1 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Spa_g01530 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Spa_g07743 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g04575 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e038288_P002 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 272 341
IPR003029 S1_domain 106 178
IPR003029 S1_domain 194 260
No external refs found!