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  5. Als_g12096

Als_g12096


Description : component *(uL4) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g12096

Target Alias Description ECC score Gene Family Method Actions
Ala_g04140 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g12528 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g00851 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.18G033500.1 Ceric.18G033500 component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.53 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre09.g397697 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01025547001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os07g08330.1 LOC_Os07g08330 component RPL4 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Len_g18811 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
MA_9991417g0010 No alias component RPL4 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Nbi_g16964 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ore_g14115 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g24610 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c23_9380V3.1 Pp3c23_9380 Ribosomal protein L4/L1 family 0.02 OrthoFinder output from all 47 species
Sam_g13131 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Solyc10g084350.2.1 Solyc10g084350 component RPL4 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Solyc10g086010.2.1 Solyc10g086010 component RPL4 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g04220 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g32778 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 275 348
IPR002136 Ribosomal_L4/L1e 23 262
No external refs found!