Pnu_g10528 (CRF4)

Aliases : CRF4

Description : subgroup ERF-VI transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g10528

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00107p00095070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AT1G68550	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT2G25820	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
AT5G47220	ERF2, ATERF2, ATERF-2	ethylene responsive element binding factor 2	0.03	OrthoFinder output from all 47 species
Adi_g009324	ATERF12, ERF12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g035511	ERF110	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079001	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g27720	No alias	subgroup ERF-V transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g42816	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0070.g036745	ATERF-9, ERF9, ATERF9	not classified & original description: CDS=1-3831	0.02	OrthoFinder output from all 47 species
Ceric.36G047400.1	Ceric.36G047400	not classified & original description: pacid=50568585...	0.02	OrthoFinder output from all 47 species
Dcu_g08328	LEP	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g15881	PUCHI	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g17593	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g00325	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g11677	No alias	subgroup ERF-V transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g51670.1	RAP2.4, LOC_Os02g51670	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os02g52670.1	ERF110, LOC_Os02g52670	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os03g64260.1	ERF1, ATERF1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g29810.1	ERF72, EBP,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
LOC_Os08g36920.1	RRTF1, LOC_Os08g36920	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Len_g20241	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Lfl_g25640	No alias	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Mp1g20040.1	ATERF4, RAP2.5,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Msp_g14031	ATERF4, RAP2.5,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g27431	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ore_g02257	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g06505	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.04	OrthoFinder output from all 47 species
Pir_g09597	CRF4	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g21797	ERF-1, ATERF-1	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g28144	DDF1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g29161	ERF104	subgroup ERF-IX transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g37433	ATERF13, ERF13, EREBP	subgroup ERF-IX transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g16792	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Pnu_g22604	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011388	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022062	No alias	subgroup ERF-VI transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc05g052030.1.1	Solyc05g052030	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc12g049560.2.1	RAP2.2, Solyc12g049560	transcription factor (ERF)	0.05	OrthoFinder output from all 47 species
Spa_g06007	CRF3	subgroup ERF-VI transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00486	ERF7, ATERF7, ATERF-7	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Tin_g11043	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Zm00001e010860_P001	HRE2, Zm00001e010860	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	203	253

External Links

No external refs found!

Pnu_g10528 (CRF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation