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  5. Als_g01897

Als_g01897


Description : RNA helicase *(Prp22) & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01897

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AMTR_s00110p00073830 ESP3, EMB2733,... RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.05 OrthoFinder output from all 47 species
AT1G27900 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT2G35340 MEE29 helicase domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g060167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107993 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g19131 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g29988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13922 EMB3011 RNA helicase *(Prp16) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g15706 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene64070.t1 EMB3011, Aspi01Gene64070 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g17488 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G078700.1 Ceric.04G078700 not classified & original description: pacid=50630845... 0.04 OrthoFinder output from all 47 species
Ceric.15G036900.1 Ceric.15G036900 RNA helicase *(Prp22) & original description:... 0.11 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Dac_g11433 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.05 OrthoFinder output from all 47 species
Dac_g20233 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44524 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03121 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20664 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42294 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01007911001 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.06 OrthoFinder output from all 47 species
GSVIVT01010362001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Gb_13411 EMB3011 RNA helicase (Prp16) 0.05 OrthoFinder output from all 47 species
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g11370.1 LOC_Os01g11370 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os07g32430.1 EMB3011, LOC_Os07g32430 RNA helicase (Prp16) 0.04 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g05720 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434449g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 OrthoFinder output from all 47 species
MA_277016g0010 ESP3, EMB2733 RNA helicase (Prp2) 0.04 OrthoFinder output from all 47 species
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.04 OrthoFinder output from all 47 species
Msp_g13247 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03086 No alias RNA helicase *(Prp22) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21732 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g42990 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g44705 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18506 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05341 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14114 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16823 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g079250.3.1 Solyc01g079250 helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
Solyc03g115390.4.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.04 OrthoFinder output from all 47 species
Solyc09g097820.3.1 Solyc09g097820 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
Spa_g12111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25913 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01282 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001487_P003 Zm00001e001487 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species
Zm00001e016478_P002 Zm00001e016478 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
Zm00001e022095_P001 ESP3, EMB2733,... RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
Zm00001e028404_P001 Zm00001e028404 RNA helicase (Prp22) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 479 567
IPR001650 Helicase_C 288 416
IPR011709 DEAD-box_helicase_OB_fold 638 714
No external refs found!