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  5. Lfl_g36110

Lfl_g36110


Description : component *(TRA1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g36110
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00268p00016240 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder output from all 47 species
AT2G17930 No alias Phosphatidylinositol 3- and 4-kinase family protein with... 0.07 OrthoFinder output from all 47 species
AT4G36080 No alias phosphotransferases, alcohol group as... 0.03 OrthoFinder output from all 47 species
Adi_g012013 No alias component *(TRA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Aev_g05547 No alias component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ala_g11954 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Als_g26378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32646 No alias component *(TRA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aop_g10616 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23771.t1 Aspi01Gene23771 component *(TRA1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ceric.07G020000.1 Ceric.07G020000 component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Dcu_g03224 No alias component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
GSVIVT01018783001 No alias Protein modification.phosphorylation.atypical kinase... 0.09 OrthoFinder output from all 47 species
Gb_02841 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g45064.1 LOC_Os07g45064 component TRA1 of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
LOC_Os07g45070.1 LOC_Os07g45070 component TRA1 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os07g45074.1 LOC_Os07g45074 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10427352g0010 No alias component TRA1 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
MA_10427352g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_3337g0010 No alias protein kinase (PIKK) 0.03 OrthoFinder output from all 47 species
Msp_g31775 No alias component *(TRA1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Nbi_g03878 No alias component *(TRA1) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Ore_g38151 No alias component *(TRA1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Pir_g15333 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ppi_g39737 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Solyc02g083900.3.1 Solyc02g083900 component TRA1 of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Spa_g25856 No alias component *(TRA1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Tin_g32158 No alias component *(TRA1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Zm00001e035713_P005 Zm00001e035713 component TRA1 of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR046805 Tra1_ring 834 2671
IPR003152 FATC_dom 3861 3890
IPR046807 Tra1_central 263 822
IPR003151 PIK-rel_kinase_FAT 2815 3153
IPR000403 PI3/4_kinase_cat_dom 3558 3804
No external refs found!