Coexpression cluster: Cluster_53 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 25.0% (25/100) 2.81 0.0 0.0
GO:0006364 rRNA processing 7.0% (7/100) 6.03 0.0 0.0
GO:0016072 rRNA metabolic process 7.0% (7/100) 6.03 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 6.0% (6/100) 6.6 0.0 0.0
GO:0042254 ribosome biogenesis 6.0% (6/100) 6.6 0.0 0.0
GO:0044085 cellular component biogenesis 6.0% (6/100) 6.47 0.0 0.0
GO:0005634 nucleus 10.0% (10/100) 4.15 0.0 0.0
GO:0034470 ncRNA processing 8.0% (8/100) 4.83 0.0 0.0
GO:0043227 membrane-bounded organelle 10.0% (10/100) 3.83 0.0 0.0
GO:0016070 RNA metabolic process 12.0% (12/100) 3.34 0.0 0.0
GO:0043226 organelle 13.0% (13/100) 3.17 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 10.0% (10/100) 3.84 0.0 0.0
GO:0043229 intracellular organelle 13.0% (13/100) 3.18 0.0 0.0
GO:0006396 RNA processing 9.0% (9/100) 4.03 0.0 0.0
GO:0005488 binding 39.0% (39/100) 1.33 0.0 0.0
GO:0034660 ncRNA metabolic process 8.0% (8/100) 4.15 0.0 0.0
GO:1901363 heterocyclic compound binding 29.0% (29/100) 1.63 0.0 0.0
GO:0097159 organic cyclic compound binding 29.0% (29/100) 1.63 0.0 0.0
GO:0090304 nucleic acid metabolic process 12.0% (12/100) 2.75 0.0 2e-06
GO:0005730 nucleolus 3.0% (3/100) 6.73 2e-06 1.1e-05
GO:0071840 cellular component organization or biogenesis 6.0% (6/100) 3.38 2.4e-05 0.00015
GO:0006139 nucleobase-containing compound metabolic process 12.0% (12/100) 2.06 3e-05 0.000179
GO:0110165 cellular anatomical entity 14.0% (14/100) 1.84 3.4e-05 0.000193
GO:0006725 cellular aromatic compound metabolic process 12.0% (12/100) 1.95 6.4e-05 0.000347
GO:0046483 heterocycle metabolic process 12.0% (12/100) 1.94 6.7e-05 0.000351
GO:1901360 organic cyclic compound metabolic process 12.0% (12/100) 1.91 8.3e-05 0.00042
GO:0005575 cellular_component 15.0% (15/100) 1.43 0.000415 0.00194
GO:0034641 cellular nitrogen compound metabolic process 12.0% (12/100) 1.66 0.000405 0.001964
GO:0003723 RNA binding 5.0% (5/100) 2.76 0.000874 0.003947
GO:0003674 molecular_function 42.0% (42/100) 0.62 0.001039 0.004536
GO:1901265 nucleoside phosphate binding 14.0% (14/100) 1.28 0.001773 0.00704
GO:0043168 anion binding 14.0% (14/100) 1.28 0.001773 0.00704
GO:0000166 nucleotide binding 14.0% (14/100) 1.28 0.001773 0.00704
GO:0035639 purine ribonucleoside triphosphate binding 13.0% (13/100) 1.32 0.002049 0.007896
GO:0032555 purine ribonucleotide binding 13.0% (13/100) 1.31 0.002129 0.007967
GO:0032553 ribonucleotide binding 13.0% (13/100) 1.29 0.002359 0.008585
GO:0097367 carbohydrate derivative binding 13.0% (13/100) 1.29 0.002471 0.008747
GO:0036094 small molecule binding 14.0% (14/100) 1.21 0.002798 0.009645
GO:0008168 methyltransferase activity 4.0% (4/100) 2.76 0.00294 0.009875
GO:0017076 purine nucleotide binding 13.0% (13/100) 1.25 0.003178 0.010153
GO:0005515 protein binding 11.0% (11/100) 1.39 0.003149 0.010315
GO:0016741 transferase activity, transferring one-carbon groups 4.0% (4/100) 2.65 0.003827 0.011936
GO:0034457 Mpp10 complex 1.0% (1/100) 7.47 0.005637 0.016782
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 1.0% (1/100) 7.47 0.005637 0.016782
GO:1990904 ribonucleoprotein complex 2.0% (2/100) 4.01 0.006751 0.019227
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.0% (2/100) 4.01 0.006751 0.019227
GO:0034062 5'-3' RNA polymerase activity 2.0% (2/100) 3.95 0.007367 0.020107
GO:0097747 RNA polymerase activity 2.0% (2/100) 3.95 0.007367 0.020107
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.0% (1/100) 6.47 0.011242 0.028876
GO:0030490 maturation of SSU-rRNA 1.0% (1/100) 6.47 0.011242 0.028876
GO:0030515 snoRNA binding 1.0% (1/100) 6.47 0.011242 0.028876
GO:0005524 ATP binding 10.0% (10/100) 1.12 0.016664 0.040425
GO:0032559 adenyl ribonucleotide binding 10.0% (10/100) 1.11 0.017184 0.040928
GO:0006351 DNA-templated transcription 2.0% (2/100) 3.34 0.016584 0.040992
GO:0097659 nucleic acid-templated transcription 2.0% (2/100) 3.34 0.016584 0.040992
GO:0030554 adenyl nucleotide binding 10.0% (10/100) 1.04 0.02373 0.049343
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Azolla filiculoides HCCA Cluster_6 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_19 0.019 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_71 0.134 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_74 0.017 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_113 0.022 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_128 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_211 0.025 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_53 0.033 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_283 0.03 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_17 0.015 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_75 0.029 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_120 0.015 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_130 0.016 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_13 0.083 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_81 0.032 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_114 0.02 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_121 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_155 0.03 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_112 0.024 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_117 0.016 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_120 0.019 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_57 0.038 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_149 0.017 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_32 0.028 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_35 0.018 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_71 0.032 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_11 0.019 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_61 0.054 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_82 0.019 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_88 0.024 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_22 0.033 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_41 0.239 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_74 0.025 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_118 0.043 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_137 0.016 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.069 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_60 0.126 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_150 0.019 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_130 0.059 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_207 0.016 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_64 0.017 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_66 0.015 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_172 0.016 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_223 0.016 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_1 0.026 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_108 0.019 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_120 0.019 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_172 0.057 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_1 0.061 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_45 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_19 0.203 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_56 0.021 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_60 0.021 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_87 0.018 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_3 0.018 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_73 0.019 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_30 0.153 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_75 0.03 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_59 0.079 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_71 0.053 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_183 0.032 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_18 0.018 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_65 0.034 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_121 0.036 OrthoFinder output from all 47 species Compare
Sequences (100) (download table)

InterPro Domains

GO Terms

Family Terms