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  5. Cba_g36237

Cba_g36237 (emb1138)


Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g36237

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00191130 PRH75,... DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00127820 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Adi_g107957 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11630 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g10440 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Aob_g09620 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G051700.1 emb1138, Ceric.21G051700 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07831 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15362 emb1138 group-II intron splicing RNA helicase *(PMH) & original... 0.03 OrthoFinder output from all 47 species
MA_10206082g0010 PMH2, ATRH53 RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species
MA_17924g0010 PRH75 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ore_g38810 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c1_40060V3.1 emb1138, Pp3c1_40060 DEAD box RNA helicase (RH3) 0.02 OrthoFinder output from all 47 species
Sam_g06711 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g29659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo150370 PRH75 DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc07g044760.3.1 PMH2, ATRH53,... RNA helicase (PMH) 0.04 OrthoFinder output from all 47 species
Spa_g06515 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Spa_g18181 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08271 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Tin_g13858 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 449 556
IPR012562 GUCT 643 739
IPR011545 DEAD/DEAH_box_helicase_dom 239 411
IPR001878 Znf_CCHC 858 873
No external refs found!