Cba_g31776


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g31776

Target Alias Description ECC score Gene Family Method Actions
AT1G05380 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.06 OrthoFinder output from all 47 species
AT4G14920 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.06 OrthoFinder output from all 47 species
AT5G36740 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.02 OrthoFinder output from all 47 species
Adi_g020053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53152.t1 Aspi01Gene53152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.03 OrthoFinder output from all 47 species
Ceric.35G031200.1 Ceric.35G031200 not classified & original description: pacid=50581090... 0.04 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 OrthoFinder output from all 47 species
Gb_10246 No alias PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g53630.1 LOC_Os03g53630 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os07g07690.1 LOC_Os07g07690 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Len_g47387 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g02467 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 OrthoFinder output from all 47 species
MA_22311g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g13351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g13767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.03 OrthoFinder output from all 47 species
Ore_g28861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g35938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19393 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.03 OrthoFinder output from all 47 species
Solyc03g005170.3.1 Solyc03g005170 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc03g071550.3.1 Solyc03g071550 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g082040.2.1 Solyc06g082040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.06 OrthoFinder output from all 47 species
Spa_g04858 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR008395 Agenet-like_dom 18 101
IPR019787 Znf_PHD-finger 917 958
IPR032308 TDBD 845 896
No external refs found!