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  5. Cba_g29163

Cba_g29163


Description : not classified & original description: none


Gene families : OG0013708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013708_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g29163

Target Alias Description ECC score Gene Family Method Actions
Als_g17292 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0011.g012524 No alias not classified & original description: CDS=1-2658 0.04 OrthoFinder output from all 47 species
Ceric.03G044700.1 Ceric.03G044700 not classified & original description: pacid=50572595... 0.04 OrthoFinder output from all 47 species
Dde_g25254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g25398 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g62258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45373 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g21835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 248 294
IPR002885 Pentatricopeptide_repeat 451 497
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 754 800
IPR002885 Pentatricopeptide_repeat 955 1002
IPR002885 Pentatricopeptide_repeat 48 90
IPR002885 Pentatricopeptide_repeat 853 901
IPR002885 Pentatricopeptide_repeat 724 751
IPR002885 Pentatricopeptide_repeat 654 683
IPR002885 Pentatricopeptide_repeat 929 954
IPR002885 Pentatricopeptide_repeat 525 551
IPR002885 Pentatricopeptide_repeat 553 579
IPR002885 Pentatricopeptide_repeat 1030 1057
IPR002885 Pentatricopeptide_repeat 151 181
IPR002885 Pentatricopeptide_repeat 425 447
IPR002885 Pentatricopeptide_repeat 324 346
IPR002885 Pentatricopeptide_repeat 626 652
IPR002885 Pentatricopeptide_repeat 123 149
No external refs found!