Cba_g27246 (SOC1, AGL20, ATSOC1)

Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g27246

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00127p00060060	SVP, AGL22,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AT4G37940	AGL21	AGAMOUS-like 21	0.03	OrthoFinder output from all 47 species
Adi_g072612	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g09951	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15812.t2	AGL13, Aspi01Gene15812	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene17593.t1	AGL104, Aspi01Gene17593	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene54037.t3	Aspi01Gene54037	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g21427	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_19178	AGL6	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Gb_38922	AGL6	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Msp_g31708	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g05686	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g41762	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c16_12230V3.1	Pp3c16_12230	No annotation	0.02	OrthoFinder output from all 47 species
Pp3c16_19170V3.1	AGL61, DIA, Pp3c16_19170	AGAMOUS-like 61	0.01	OrthoFinder output from all 47 species
Ppi_g08456	AGL21	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g41259	AGL3, SEP4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g06486	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e023825_P002	SVP, AGL22,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	82	129
IPR002487	TF_Kbox	179	263

External Links

No external refs found!

Cba_g27246 (SOC1, AGL20, ATSOC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation