Cba_g20844

Description : nMAT1/2 type-I mitochondrial RNA splicing factor & original description: none

Gene families : OG0003627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003627_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g20844

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00133480	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00110p00142760	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
Als_g06394	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09829	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.05	OrthoFinder output from all 47 species
Ceric.09G034500.1	Ceric.09G034500	not classified & original description: pacid=50588493...	0.02	OrthoFinder output from all 47 species
Lfl_g18272	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.04	OrthoFinder output from all 47 species
Msp_g24502	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g39085	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Ppi_g05248	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007424	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Solyc08g077385.1.1	Solyc08g077385	nMAT1/2 type-I mitochondrial RNA splicing factor	0.04	OrthoFinder output from all 47 species
Tin_g13211	No alias	nMAT1/2 type-I mitochondrial RNA splicing factor &...	0.03	OrthoFinder output from all 47 species
Tin_g13529	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000458_P001	Zm00001e000458	nMAT1/2 type-I mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Zm00001e000640_P001	Zm00001e000640	nMAT1/2 type-I mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Zm00001e011594_P001	Zm00001e011594	nMAT1/2 type-I mitochondrial RNA splicing factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024937	Domain_X	489	582

External Links

No external refs found!

Cba_g20844

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation