Cba_g18092

Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex & original description: none

Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g18092

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00163370	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.05	OrthoFinder output from all 47 species
AT4G14160	No alias	Sec23/Sec24 protein transport family protein	0.02	OrthoFinder output from all 47 species
Aev_g02536	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
Als_g14171	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Als_g38023	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Aob_g05331	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Azfi_s0118.g046613	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.05	OrthoFinder output from all 47 species
Ceric.01G119200.1	Ceric.01G119200	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001408.15	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.01	OrthoFinder output from all 47 species
Cre03.g180850	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.01	OrthoFinder output from all 47 species
Dcu_g08281	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.04	OrthoFinder output from all 47 species
GSVIVT01026719001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.04	OrthoFinder output from all 47 species
GSVIVT01031567001	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.02	OrthoFinder output from all 47 species
Gb_05558	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
LOC_Os11g24560.1	LOC_Os11g24560	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.04	OrthoFinder output from all 47 species
Mp2g15530.1	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.02	OrthoFinder output from all 47 species
Mp7g12190.1	No alias	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Nbi_g05423	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Pir_g15054	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Pnu_g06560	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Sam_g10197	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Smo168140	No alias	Vesicle trafficking.Coat protein II (COPII) coatomer...	0.03	OrthoFinder output from all 47 species
Solyc01g081070.3.1	Solyc01g081070	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.04	OrthoFinder output from all 47 species
Spa_g17950	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.02	OrthoFinder output from all 47 species
Spa_g53620	No alias	component *(Sec23) of Sec23/24 cargo adaptor subcomplex...	0.03	OrthoFinder output from all 47 species
Zm00001e008888_P001	Zm00001e008888	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.05	OrthoFinder output from all 47 species
Zm00001e009959_P002	Zm00001e009959	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.03	OrthoFinder output from all 47 species
Zm00001e021415_P001	Zm00001e021415	component Sec23 of Sec23/24 cargo adaptor subcomplex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA
MF	GO:0061666	UFM1 ligase activity	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0071568	UFM1 transferase activity	IEP	HCCA
BP	GO:0071569	protein ufmylation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006900	Sec23/24_helical_dom	519	617
IPR006896	Sec23/24_trunk_dom	121	387
IPR006895	Znf_Sec23_Sec24	54	92
IPR012990	Sec23_24_beta_S	401	505
IPR007123	Gelsolin-like_dom	632	719

External Links

No external refs found!

Cba_g18092

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation