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  5. Cba_g17070

Cba_g17070 (UBP12)


Aliases : UBP12

Description : deubiquitinase *(UBP12-13) & original description: none


Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g17070

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00140970 UBP13,... Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G11910 UBP13 ubiquitin-specific protease 13 0.02 OrthoFinder output from all 47 species
AT5G06600 UBP12 ubiquitin-specific protease 12 0.03 OrthoFinder output from all 47 species
Adi_g022452 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06794 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21287 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19646 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29323 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32969 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04496 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20270 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038193 UBP12 deubiquitinase *(UBP12-13) & original description: CDS=241-3615 0.03 OrthoFinder output from all 47 species
Ceric.04G077200.1 UBP13, Ceric.04G077200 deubiquitinase *(UBP12-13) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.13G025300.1 UBP13, Ceric.13G025300 deubiquitinase *(UBP12-13) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.24G037500.1 UBP12, Ceric.24G037500 deubiquitinase *(UBP12-13) & original description:... 0.05 OrthoFinder output from all 47 species
Cre07.g336200 UBP12 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g06495 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022498001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01034603001 UBP12 Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder output from all 47 species
LOC_Os07g06950.1 UBP12, LOC_Os07g06950 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
LOC_Os11g36470.1 UBP13, LOC_Os11g36470 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
LOC_Os12g30540.1 UBP12, LOC_Os12g30540 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Len_g10766 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23299 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05026 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40373 UBP12 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g15430.1 UBP12 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.01 OrthoFinder output from all 47 species
Ppi_g16380 UBP13 deubiquitinase *(UBP12-13) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g055090.4.1 UBP12, Solyc05g055090 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Solyc10g081610.2.1 UBP12, Solyc10g081610 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Solyc11g006320.2.1 UBP12, Solyc11g006320 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.02 OrthoFinder output from all 47 species
Zm00001e017788_P001 UBP12, Zm00001e017788 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 OrthoFinder output from all 47 species
Zm00001e019687_P003 UBP13, Zm00001e019687 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species
Zm00001e024432_P001 UBP12, Zm00001e024432 ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
CC GO:0044599 AP-5 adaptor complex IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 200 521
IPR002083 MATH/TRAF_dom 62 182
IPR029346 USP_C 892 1102
IPR024729 USP7_ICP0-binding_dom 625 878
No external refs found!