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  5. Cba_g15920

Cba_g15920 (RACK1C_AT)


Aliases : RACK1C_AT

Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g15920

Target Alias Description ECC score Gene Family Method Actions
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.02 OrthoFinder output from all 47 species
Als_g08943 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene18484.t2 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g15083 RACK1B_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g07482 RACK1B_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Gb_33900 RACK1B_AT associated component RACK1 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_10435947g0010 RACK1B_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder output from all 47 species
Sam_g19034 No alias component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Spa_g16013 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Spa_g25398 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g45000 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034227 tRNA thio-modification IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 283 311
IPR001680 WD40_repeat 229 260
IPR001680 WD40_repeat 97 132
IPR001680 WD40_repeat 145 178
IPR001680 WD40_repeat 56 90
IPR001680 WD40_repeat 186 220
IPR001680 WD40_repeat 9 44
No external refs found!