Cba_g14820

Description : not classified & original description: none

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g14820

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00028p00237040	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G48650	No alias	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Aspi01Gene17058.t1	Aspi01Gene17058	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene63075.t1	Aspi01Gene63075	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene63077.t1	Aspi01Gene63077	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene70472.t2	Aspi01Gene70472	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.23G070100.1	Ceric.23G070100	not classified & original description: pacid=50609964...	0.02	OrthoFinder output from all 47 species
Ehy_g15250	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01022608001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Lfl_g04976	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g48089	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc04g007510.4.1	Solyc04g007510	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0031248	protein acetyltransferase complex	IEP	HCCA
CC	GO:0070461	SAGA-type complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
CC	GO:1902493	acetyltransferase complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	702	773
IPR014720	dsRBD_dom	1035	1095
IPR011545	DEAD/DEAH_box_helicase_dom	258	401
IPR001650	Helicase_C	508	638
IPR011709	DEAD-box_helicase_OB_fold	858	939

External Links

No external refs found!