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  5. Cba_g13721

Cba_g13721


Description : not classified & original description: none


Gene families : OG0003174 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g13721

Target Alias Description ECC score Gene Family Method Actions
AT1G67325 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g113168 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G096600.1 Ceric.11G096600 not classified & original description: pacid=50596230... 0.03 OrthoFinder output from all 47 species
MA_10427843g0020 No alias RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g09920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005049 No alias not classified & original description: CDS=277-1155 0.04 OrthoFinder output from all 47 species
Sam_g20001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g015500.4.1 Solyc05g015500 RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e021906_P002 Zm00001e021906 RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 235 266
IPR001876 Znf_RanBP2 186 215
IPR001876 Znf_RanBP2 21 52
No external refs found!