Cba_g10039

Description : 16S-rRNA maturation factor *(RBF1) & original description: none

Gene families : OG0006622 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006622_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g10039
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
Aev_g05108	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12131	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g08614	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g07697	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g22214	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07524	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g16747	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g01125	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Mp1g03290.1	No alias	Probable ribosome-binding factor A, chloroplastic...	0.03	OrthoFinder output from all 47 species
Nbi_g07187	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g09391	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15385	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g25386	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.03	OrthoFinder output from all 47 species
Smo48536	No alias	Probable ribosome-binding factor A, chloroplastic...	0.03	OrthoFinder output from all 47 species
Tin_g17600	No alias	16S-rRNA maturation factor *(RBF1) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042586	peptide deformylase activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000238	RbfA	67	183

External Links

No external refs found!

Cba_g10039

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation