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  5. Cba_g09340

Cba_g09340


Description : not classified & original description: none


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g09340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256130 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00123610 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G18950 No alias Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g023030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16590 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Aev_g47144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g36145 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05740.t1 Aspi01Gene05740 not classified & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene05748.t1 Aspi01Gene05748 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene11108.t1 Aspi01Gene11108 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23387.t1 Aspi01Gene23387 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30209.t1 Aspi01Gene30209 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44873.t1 Aspi01Gene44873 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60159.t1 Aspi01Gene60159 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene68892.t1 Aspi01Gene68892 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68894.t1 Aspi01Gene68894 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G012600.1 Ceric.28G012600 not classified & original description: pacid=50570711... 0.02 OrthoFinder output from all 47 species
Ceric.28G012700.1 Ceric.28G012700 not classified & original description: pacid=50571070... 0.03 OrthoFinder output from all 47 species
Dac_g02144 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g19296 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g25993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031882001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_19215 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Gb_27340 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_10429180g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g28913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10178 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g109120.3.1 Solyc01g109120 Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e007790_P001 Zm00001e007790 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e015781_P001 Zm00001e015781 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e041085_P001 Zm00001e041085 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 269 302
IPR001680 WD40_repeat 404 433
IPR001680 WD40_repeat 354 389
IPR001680 WD40_repeat 307 342
IPR001680 WD40_repeat 443 482
No external refs found!