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  5. Cba_g07403

Cba_g07403 (RPT1A)


Aliases : RPT1A

Description : regulatory component *(RPT1) of 26S proteasome & original description: none


Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g07403

Target Alias Description ECC score Gene Family Method Actions
AT1G53750 RPT1A regulatory particle triple-A 1A 0.02 OrthoFinder output from all 47 species
Aop_g01687 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
LOC_Os06g09290.2 RPT1A, LOC_Os06g09290 regulatory component RPT1 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Mp2g04840.1 RPT1A regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026279 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e016066_P001 RPT1A, Zm00001e016066 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Zm00001e023743_P001 RPT1A, Zm00001e023743 regulatory component RPT1 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 205 249
IPR003959 ATPase_AAA_core 50 182
No external refs found!