Cba_g04072 (HSP93-V, DCA1,...)

Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1

Description : chaperone component *(ClpC) of chloroplast Clp-type protease complex & original description: none

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g04072
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00042430	CLPB3, CLPB-P,...	External stimuli response.temperature.Hsp...	0.02	OrthoFinder output from all 47 species
Ala_g09892	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ala_g11691	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Aob_g07406	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Aob_g15153	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g16301	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Aop_g16852	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Aspi01Gene69739.t1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cba_g20352	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.30G013400.1	SAG15, CLPD,...	chaperone component *(ClpD) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cre02.g091400	CLPB4, CLPB-M, HSP98.7	Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre02.g143307	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g16054	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Len_g29759	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Len_g34142	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Len_g37043	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.05	OrthoFinder output from all 47 species
Len_g59755	CLPB3, CLPB-P, APG6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_229920g0010	CLPB3, CLPB-P, APG6	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_763g0010	CLPB4, CLPB-M, HSP98.7	organellar chaperone (Clp-p\|Clp-m)	0.02	OrthoFinder output from all 47 species
Msp_g05637	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Nbi_g10414	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.04	OrthoFinder output from all 47 species
Nbi_g12284	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ore_g13933	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11817	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Pir_g19845	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Sam_g16602	No alias	chaperone component *(ClpC) of chloroplast Clp-type...	0.05	OrthoFinder output from all 47 species
Sam_g19448	No alias	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Smo133845	SAG15, CLPD, ERD1	Chaperone protein ClpD1, chloroplastic OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Smo439163	HSP93-V, DCA1,...	External stimuli response.temperature.Hsp...	0.04	OrthoFinder output from all 47 species
Spa_g21408	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Zm00001e039805_P002	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019489	Clp_ATPase_C	820	899
IPR041546	ClpA/ClpB_AAA_lid	440	541
IPR003959	ATPase_AAA_core	302	431
IPR004176	Clp_R_dom	187	238
IPR004176	Clp_R_dom	111	163
IPR003959	ATPase_AAA_core	639	814

External Links

No external refs found!

Cba_g04072 (HSP93-V, DCA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation