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  5. Cba_g00840

Cba_g00840


Description : protein involved in PS-II assembly *(HCF244) & original description: none


Gene families : OG0005073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g00840
Cluster HCCA: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00228610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AT4G35250 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.13 OrthoFinder output from all 47 species
Adi_g083362 No alias protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
Ala_g14214 No alias protein involved in PS-II assembly *(HCF244) & original... 0.09 OrthoFinder output from all 47 species
Als_g01643 No alias protein involved in PS-II assembly *(HCF244) & original... 0.04 OrthoFinder output from all 47 species
Aob_g08922 No alias protein involved in PS-II assembly *(HCF244) & original... 0.11 OrthoFinder output from all 47 species
Aop_g02819 No alias protein involved in PS-II assembly *(HCF244) & original... 0.1 OrthoFinder output from all 47 species
Aspi01Gene42667.t1 Aspi01Gene42667 protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0435.g069924 No alias protein involved in PS-II assembly *(HCF244) & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G004000.1 Ceric.07G004000 protein involved in PS-II assembly *(HCF244) & original... 0.12 OrthoFinder output from all 47 species
Cre02.g142146 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Dac_g03765 No alias protein involved in PS-II assembly *(HCF244) & original... 0.1 OrthoFinder output from all 47 species
Dcu_g02684 No alias protein involved in PS-II assembly *(HCF244) & original... 0.09 OrthoFinder output from all 47 species
Dde_g15071 No alias protein involved in PS-II assembly *(HCF244) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g32101 No alias protein involved in PS-II assembly *(HCF244) & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01023933001 No alias Photosynthesis.photophosphorylation.photosystem... 0.14 OrthoFinder output from all 47 species
Gb_20261 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g44000.1 LOC_Os08g44000 HCF244 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Len_g09839 No alias protein involved in PS-II assembly *(HCF244) & original... 0.08 OrthoFinder output from all 47 species
Lfl_g02979 No alias protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
MA_10432153g0010 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
MA_10437102g0010 No alias HCF244 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species
Mp8g06810.1 No alias HCF244 protein involved in PS-II assembly 0.11 OrthoFinder output from all 47 species
Nbi_g12400 No alias protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
Ore_g03288 No alias protein involved in PS-II assembly *(HCF244) & original... 0.06 OrthoFinder output from all 47 species
Pir_g14964 No alias protein involved in PS-II assembly *(HCF244) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g06043 No alias protein involved in PS-II assembly *(HCF244) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g13694 No alias protein involved in PS-II assembly *(HCF244) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017156 No alias protein involved in PS-II assembly *(HCF244) & original... 0.04 OrthoFinder output from all 47 species
Sam_g18478 No alias protein involved in PS-II assembly *(HCF244) & original... 0.08 OrthoFinder output from all 47 species
Smo235693 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Solyc01g112060.4.1 Solyc01g112060 HCF244 protein involved in PS-II assembly 0.12 OrthoFinder output from all 47 species
Spa_g11765 No alias protein involved in PS-II assembly *(HCF244) & original... 0.04 OrthoFinder output from all 47 species
Tin_g05090 No alias protein involved in PS-II assembly *(HCF244) & original... 0.11 OrthoFinder output from all 47 species
Zm00001e003972_P002 Zm00001e003972 HCF244 protein involved in PS-II assembly 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008030 NmrA-like 111 333
No external refs found!