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  5. Sam_g52516

Sam_g52516


Description : not classified & original description: none


Gene families : OG0000425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000425_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52516
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT1G02890 No alias AAA-type ATPase family protein 0.02 OrthoFinder output from all 47 species
Adi_g024938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098877 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38622.t1 Aspi01Gene38622 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38637.t1 Aspi01Gene38637 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0805.g087571 No alias not classified & original description: CDS=256-3405 0.03 OrthoFinder output from all 47 species
Dcu_g43976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01012038001 No alias ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder output from all 47 species
GSVIVT01027983001 No alias ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder output from all 47 species
Gb_07718 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_24382 No alias Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os07g47530.1 LOC_Os07g47530 ATPase family AAA domain-containing protein FIGL1... 0.02 OrthoFinder output from all 47 species
Lfl_g04238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g19800.1 No alias Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Pir_g08629 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 138 268
IPR041569 AAA_lid_3 292 326
No external refs found!