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  5. Sam_g52375

Sam_g52375


Description : not classified & original description: none


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g52375
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.6 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000802.25 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01003713001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
MA_2719537g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g20735 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g091710.3.1 Solyc02g091710 ubiquitin protein ligase (WAV3) 0.03 OrthoFinder output from all 47 species
Zm00001e008822_P002 Zm00001e008822 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e040514_P001 Zm00001e040514 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
Zm00001e041206_P001 Zm00001e041206 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 91 120
No external refs found!