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  5. Sam_g51114

Sam_g51114


Description : germ cell differentiation factor *(RKD) & original description: none


Gene families : OG0000385 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g51114

Target Alias Description ECC score Gene Family Method Actions
Aob_g29859 No alias germ cell differentiation factor *(RKD) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000444.14 No alias RNA biosynthesis.transcriptional activation.NIN-like... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001443.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre03.g149400 No alias RNA biosynthesis.transcriptional activation.NIN-like... 0.01 OrthoFinder output from all 47 species
Ehy_g10890 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002147 No alias RKD-type transcription factor & original description: CDS=23-2392 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024068 No alias germ cell differentiation factor *(RKD) & original... 0.03 OrthoFinder output from all 47 species
Spa_g47301 No alias SMARCF component *(LFR) of SWI/SNF chromatin remodeling... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003035 RWP-RK_dom 350 397
No external refs found!