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  5. Sam_g50912

Sam_g50912


Description : component *(SCC3) of cohesin regulator complex & original description: none


Gene families : OG0004065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50912

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00122610 SCC3, ATSCC3,... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
AT2G47980 SCC3, ATSCC3 sister-chromatid cohesion protein 3 0.04 OrthoFinder output from all 47 species
Adi_g059337 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.05 OrthoFinder output from all 47 species
Aob_g03603 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0315.g064312 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Ceric.18G084600.1 SCC3, ATSCC3,... component *(SCC3) of cohesin regulator complex &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000189.50 SCC3, ATSCC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
Ehy_g23606 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01011020001 SCC3, ATSCC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.1 OrthoFinder output from all 47 species
LOC_Os05g09620.1 SCC3, ATSCC3,... component SCC3 of cohesin regulator complex 0.06 OrthoFinder output from all 47 species
Lfl_g34617 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
MA_10426289g0010 SCC3, ATSCC3 Sister-chromatid cohesion protein 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10428096g0010 SCC3, ATSCC3 Sister-chromatid cohesion protein 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_77394g0010 SCC3, ATSCC3 component SCC3 of cohesin regulator complex 0.03 OrthoFinder output from all 47 species
Mp3g01380.1 SCC3, ATSCC3 component SCC3 of cohesin regulator complex 0.02 OrthoFinder output from all 47 species
Msp_g14889 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g08679 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Ore_g15148 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.06 OrthoFinder output from all 47 species
Pir_g10942 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015994 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Solyc05g026510.4.1 SCC3, ATSCC3,... component SCC3 of cohesin regulator complex 0.05 OrthoFinder output from all 47 species
Spa_g04594 SCC3, ATSCC3 component *(SCC3) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e011344_P004 SCC3, ATSCC3,... component SCC3 of cohesin regulator complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013721 STAG 195 303
No external refs found!