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  5. Sam_g50149

Sam_g50149


Description : protein involved in PS-II assembly *(LPA1) & original description: none


Gene families : OG0007503 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g50149
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00200960 LPA1,... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT1G02910 LPA1 tetratricopeptide repeat (TPR)-containing protein 0.03 OrthoFinder output from all 47 species
Aev_g09161 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Als_g14081 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0301.g063734 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.04 OrthoFinder output from all 47 species
Cba_g11947 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.02 OrthoFinder output from all 47 species
Cre10.g430150 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 OrthoFinder output from all 47 species
Dcu_g02841 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01027972001 LPA1 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
LOC_Os01g25600.1 LPA1, LOC_Os01g25600 LPA1 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Lfl_g03930 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g20376 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Pir_g10734 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g33137 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017935 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.03 OrthoFinder output from all 47 species
Smo134250 LPA1 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Tin_g06564 LPA1 protein involved in PS-II assembly *(LPA1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e017629_P003 LPA1, Zm00001e017629 LPA1 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR021883 LPA1-like 170 246
No external refs found!