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  5. Sam_g49202

Sam_g49202


Description : not classified & original description: none


Gene families : OG0000424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49202

Target Alias Description ECC score Gene Family Method Actions
AT4G36730 GBF1 G-box binding factor 1 0.02 OrthoFinder output from all 47 species
Adi_g006510 bZIP16, AtbZIP16 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g024063 GBF1 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24191 bZIP68, AtbZIP68 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06698 bZIP16, AtbZIP16 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19159.t1 bZIP16,... bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g001017 bZIP16, AtbZIP16 not classified & original description: CDS=4-804 0.03 OrthoFinder output from all 47 species
Ehy_g03457 bZIP16, AtbZIP16 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19328 bZIP16, AtbZIP16 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_13495 bZIP16, AtbZIP16 transcription factor (bZIP) 0.01 OrthoFinder output from all 47 species
Len_g04268 bZIP16, AtbZIP16 bZIP class-G transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Len_g11365 bZIP16, AtbZIP16 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32434 bZIP16, AtbZIP16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09312 bZIP68, AtbZIP68 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17967 bZIP68, AtbZIP68 bZIP class-G transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g54358 bZIP16, AtbZIP16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10223 bZIP16, AtbZIP16 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004827 bZIP 83 145
No external refs found!