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  5. Sam_g49195

Sam_g49195


Description : accessory component of RAB-GTPase geranylgeranyltransferase (RGT) complex & original description: none


Gene families : OG0004631 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004631_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g49195

Target Alias Description ECC score Gene Family Method Actions
Ceric.26G050100.1 AthREP, REP,... accessory component of RAB-GTPase... 0.03 OrthoFinder output from all 47 species
Cre10.g425550 AthREP, REP No description available 0.03 OrthoFinder output from all 47 species
Pnu_g16892 AthREP, REP accessory component of RAB-GTPase... 0.02 OrthoFinder output from all 47 species
Solyc02g082730.3.1 AthREP, REP,... accessory subunit of RAB-GTPase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEA Interproscan
BP GO:0007264 small GTPase mediated signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR018203 GDP_dissociation_inhibitor 9 56
IPR018203 GDP_dissociation_inhibitor 115 452
No external refs found!