Sam_g48102

Description : component *(eL20) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001533_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g48102
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00234980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT1G29965	No alias	Ribosomal protein L18ae/LX family protein	0.03	OrthoFinder output from all 47 species
AT2G34480	No alias	Ribosomal protein L18ae/LX family protein	0.09	OrthoFinder output from all 47 species
AT3G14600	No alias	Ribosomal protein L18ae/LX family protein	0.04	OrthoFinder output from all 47 species
Adi_g041918	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g125831	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g37995	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g20873	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g31464	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.03G061300.1	Ceric.03G061300	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.28G006400.1	Ceric.28G006400	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.59	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Cre01.g047750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Dac_g15791	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dac_g25344	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g26638	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g46104	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g29737	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g42842	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01000485001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01021430001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01021433001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Gb_05341	No alias	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os01g47660.1	LOC_Os01g47660	component RPL18a of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os01g54870.1	LOC_Os01g54870	component RPL18a of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os05g49030.1	LOC_Os05g49030	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_12029g0010	No alias	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.07	OrthoFinder output from all 47 species
Msp_g09599	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g28896	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000703	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g14890	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g28083	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g28696	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g32152	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g47831	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Solyc06g065590.4.1	Solyc06g065590	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g43846	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g15697	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e020218_P001	Zm00001e020218	component RPL18a of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e026540_P001	Zm00001e026540	component RPL18a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e028015_P002	Zm00001e028015	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e032436_P001	Zm00001e032436	component RPL18a of LSU proteome component	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003785	actin monomer binding	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
MF	GO:0008073	ornithine decarboxylase inhibitor activity	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008199	ferric iron binding	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016151	nickel cation binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0042979	ornithine decarboxylase regulator activity	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	7	130

External Links

No external refs found!

Sam_g48102

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation