1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g30136

Lfl_g30136


Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g30136
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00185p00055680 HIS1-3,... Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
Adi_g047347 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g047348 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07230 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g36506 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09733 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G011100.1 HIS1-3, Ceric.34G011100 linker histone *(H1) & original description:... 0.02 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.01 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.01 OrthoFinder output from all 47 species
Lfl_g24690 HIS1-3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06319 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06559 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.01 OrthoFinder output from all 47 species
Zm00001e032965_P005 Zm00001e032965 linker histone (H1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 43 110
No external refs found!