Lfl_g29464 (HIS1-3)

Aliases : HIS1-3

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g29464
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
Adi_g054235	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g103074	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g60256	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g29453	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01018807001	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.06	OrthoFinder output from all 47 species
Gb_29223	HIS1-3	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Pir_g28209	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00409	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e006018_P006	Zm00001e006018	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	48	115

External Links

No external refs found!