Sam_g40367

Description : EC_4.1 carbon-carbon lyase & original description: none

Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g40367

Target	Alias	Description	ECC score	Gene Family Method
AT5G15950	No alias	Adenosylmethionine decarboxylase family protein	0.03	OrthoFinder output from all 47 species
Adi_g056998	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g35112	SAMDC	EC_4.1 carbon-carbon lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g03505	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g10694	No alias	ornithine decarboxylase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g23895	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G058600.1	SAMDC, Ceric.07G058600	EC_4.1 carbon-carbon lyase & original description:...	0.02	OrthoFinder output from all 47 species
Gb_37304	No alias	ornithine decarboxylase	0.03	OrthoFinder output from all 47 species
LOC_Os04g42095.1	LOC_Os04g42095	S-adenosyl methionine decarboxylase	0.05	OrthoFinder output from all 47 species
LOC_Os09g37120.1	LOC_Os09g37120	ornithine decarboxylase	0.02	OrthoFinder output from all 47 species
Lfl_g23603	SAMDC	EC_4.1 carbon-carbon lyase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g25083	No alias	ornithine decarboxylase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g09591	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g05489	No alias	EC_4.1 carbon-carbon lyase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e007686_P001	Zm00001e007686	S-adenosyl methionine decarboxylase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEA	Interproscan
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006595	polyamine metabolic process	None	Extended
BP	GO:0006596	polyamine biosynthetic process	None	Extended
BP	GO:0006597	spermine biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008215	spermine metabolic process	None	Extended
BP	GO:0008216	spermidine metabolic process	None	Extended
BP	GO:0008295	spermidine biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	biogenic amine biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001985	S-AdoMet_decarboxylase	4	357

External Links

No external refs found!

Sam_g40367

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation