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  5. Sam_g39848

Sam_g39848


Description : E-class RAB GTPase & original description: none


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39848

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00168p00058210 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Adi_g117529 ATRABE1C,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62722.t1 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07305 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09631 No alias E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25309 No alias E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016596001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
LOC_Os03g60530.1 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Msp_g05932 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25496 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c16_17470V3.1 ATRABE1C,... RAB GTPase homolog 8A 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011564 ATRABE1C,... not classified & original description: CDS=148-741 0.02 OrthoFinder output from all 47 species
Solyc11g073050.2.1 ATRABE1C,... E-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Spa_g16776 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009367_P001 Zm00001e009367 E-class RAB GTPase 0.01 OrthoFinder output from all 47 species
Zm00001e011404_P001 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e033170_P001 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 59 220
No external refs found!