Sam_g39179


Description : not classified & original description: none


Gene families : OG0000290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000290_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g39179

Target Alias Description ECC score Gene Family Method Actions
AT1G63220 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.02 OrthoFinder output from all 47 species
AT3G55470 No alias Calcium-dependent lipid-binding (CaLB domain) family protein 0.03 OrthoFinder output from all 47 species
Adi_g020798 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39907 SYT5, NTMC2T2.1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15534.t1 Aspi01Gene15534 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0304.g063875 No alias not classified & original description: CDS=63-827 0.02 OrthoFinder output from all 47 species
Ceric.17G021000.1 Ceric.17G021000 not classified & original description: pacid=50617770... 0.04 OrthoFinder output from all 47 species
Ceric.17G021100.1 Ceric.17G021100 not classified & original description: pacid=50617412... 0.03 OrthoFinder output from all 47 species
Ehy_g09548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g44870.1 LOC_Os04g44870 Elicitor-responsive protein 3 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Mp4g14560.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g14843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15651 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53692 SYT5, NTMC2T2.1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000008 C2_dom 188 282
IPR000008 C2_dom 55 155
No external refs found!