Sam_g38609

Description : basal Sigma-type transcription factor & original description: none

Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g38609

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00011p00258380	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00011p00266100	SIGB, SIG2,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00056p00209700	SIGC, SIG3,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AT1G64860	SIGB, SIG2,...	sigma factor A	0.02	OrthoFinder output from all 47 species
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.03	OrthoFinder output from all 47 species
AT3G53920	SIGC, SIG3	RNApolymerase sigma-subunit C	0.03	OrthoFinder output from all 47 species
AT5G13730	SIGD, SIG4	sigma factor 4	0.03	OrthoFinder output from all 47 species
Adi_g078223	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g01395	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g07913	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g02431	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ala_g08338	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ala_g12116	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g19265	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.07	OrthoFinder output from all 47 species
Als_g16202	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g20576	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g27390	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g61402	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aob_g09016	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g09018	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g16433	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aop_g04543	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene07233.t1	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0001.g000670	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0178.g056190	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g03997	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g05885	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g10475	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G009200.1	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G083900.1	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.05G066000.1	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cre03.g194950	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.01	OrthoFinder output from all 47 species
Dac_g09532	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g05693	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dde_g03888	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g18194	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g24733	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g04026	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g05906	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g07794	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g12113	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01032193001	SIGD, SIG4	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
GSVIVT01035330001	SIGC, SIG3	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
Gb_05480	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_23845	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
LOC_Os05g51150.1	SIGC, SIG3,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Len_g03332	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Lfl_g03177	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
MA_10429585g0010	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Msp_g15805	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g19924	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g24180	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g09351	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g08024	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ore_g13016	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g32531	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g33804	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pir_g00589	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g12897	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g64419	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g07492	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007071	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023922	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g13485	No alias	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Smo117159	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
Solyc03g097320.3.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Solyc06g072710.3.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Solyc08g065970.3.1	SIGC, SIG3,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Solyc09g008040.3.1	SIGF, SIG6,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Spa_g05515	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g13112	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Tin_g12918	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Zm00001e021420_P001	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004366	glycerol-3-phosphate O-acyltransferase activity	IEP	HCCA
MF	GO:0008199	ferric iron binding	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	348	417
IPR007624	RNA_pol_sigma70_r3	430	502
IPR007630	RNA_pol_sigma70_r4	516	569

External Links

No external refs found!

Sam_g38609

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation