Lfl_g29188

Description : component *(eS24) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g29188
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00221450	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT3G04920	No alias	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
AT5G28060	No alias	Ribosomal protein S24e family protein	0.02	OrthoFinder output from all 47 species
Ala_g21106	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g11596	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g10450	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0007.g011184	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g78636	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.04G017300.1	Ceric.04G017300	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000361.64	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre10.g456200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g17551	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g20443	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01021860001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Gb_38272	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os01g52490.1	LOC_Os01g52490	component RPS24 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os02g13530.1	LOC_Os02g13530	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os06g36160.1	LOC_Os06g36160	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Len_g49108	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_119841g0010	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Pp3c12_10760V3.1	Pp3c12_10760	Ribosomal protein S24e family protein	0.02	OrthoFinder output from all 47 species
Pp3c13_22220V3.1	Pp3c13_22220	Ribosomal protein S24e family protein	0.01	OrthoFinder output from all 47 species
Ppi_g14489	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g20951	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g12713	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g12714	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g47032	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo271584	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Solyc01g097870.3.1	Solyc01g097870	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc06g084230.3.1	Solyc06g084230	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc09g065330.3.1	Solyc09g065330	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g10585	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g19361	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g29759	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g40771	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e014422_P002	Zm00001e014422	component RPS24 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e028203_P001	Zm00001e028203	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e030668_P001	Zm00001e030668	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
MF	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	26	104

External Links

No external refs found!

Lfl_g29188

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation