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  5. Sam_g36276

Sam_g36276


Description : component *(DDR) of ISWI chromatin remodeling complex & original description: none


Gene families : OG0002395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g36276
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT1G18950 No alias DDT domain superfamily 0.02 OrthoFinder output from all 47 species
Als_g15932 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Als_g29182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27905 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020825.11 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre09.g400000 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g26694 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01008087001 No alias DDT domain-containing protein DDR4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_13313 No alias DDT domain-containing protein DDR4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os07g09580.1 LOC_Os07g09580 DDT domain-containing protein DDR4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g15257 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
MA_10426270g0020 No alias DDT domain-containing protein DDR4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_136885g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_34255g0010 No alias DDT domain-containing protein DDR4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_78910g0010 No alias DDT domain-containing protein DDR4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g01850.1 No alias DDT domain-containing protein DDR4 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Ore_g16010 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Pnu_g08116 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g53958 No alias component *(DDR) of ISWI chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Smo411205 No alias DDT domain-containing protein DDR4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc03g113500.4.1 Solyc03g113500 DDT domain-containing protein DDR4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Tin_g05217 No alias component *(DDR) of ISWI chromaTin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e006041_P001 Zm00001e006041 DDT domain-containing protein DDR4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e011411_P001 Zm00001e011411 DDT domain-containing protein DDR4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e033055_P001 Zm00001e033055 DDT domain-containing protein DDR4 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR018501 DDT_dom 131 175
No external refs found!