Sam_g32727

Description : component *(uS19) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0002650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002650_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g32727

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00076070	RPS15,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT1G04270	RPS15	cytosolic ribosomal protein S15	0.05	OrthoFinder output from all 47 species
AT5G09510	No alias	Ribosomal protein S19 family protein	0.04	OrthoFinder output from all 47 species
Adi_g040175	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g67230	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0132.g049172	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0242.g059794	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.1Z099000.1	Ceric.1Z099000	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020830.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Cre08.g360900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Dde_g47858	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01000754001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01018113001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_36524	RPS15	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g58430.1	LOC_Os03g58430	component RPS15 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os07g08660.1	LOC_Os07g08660	component RPS15 of SSU proteome	0.09	OrthoFinder output from all 47 species
Len_g14378	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g00451	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_14543g0010	No alias	component RPS15 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_18691g0010	No alias	40S ribosomal protein S15 OS=Picea mariana...	0.04	OrthoFinder output from all 47 species
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.09	OrthoFinder output from all 47 species
Pp3c3_23700V3.1	Pp3c3_23700	Ribosomal protein S19 family protein	0.02	OrthoFinder output from all 47 species
Smo172403	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc02g082000.3.1	RPS15, Solyc02g082000	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species
Solyc09g083370.3.1	RPS15, Solyc09g083370	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species
Spa_g03572	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g04015	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g10752	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e011449_P001	Zm00001e011449	component RPS15 of SSU proteome	0.08	OrthoFinder output from all 47 species
Zm00001e011450_P001	Zm00001e011450	component RPS15 of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e032961_P001	Zm00001e032961	component RPS15 of SSU proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	73	156

External Links

No external refs found!

Sam_g32727

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation