Sam_g32727

Description : component *(uS19) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0002650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002650_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g32727

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00076070	RPS15,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
AT1G04270	RPS15	cytosolic ribosomal protein S15	0.05	OrthoFinder output from all 47 species
AT5G09510	No alias	Ribosomal protein S19 family protein	0.04	OrthoFinder output from all 47 species
Adi_g040175	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g67230	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0132.g049172	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0242.g059794	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.1Z099000.1	Ceric.1Z099000	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020830.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Cre08.g360900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Dde_g47858	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01000754001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
GSVIVT01018113001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_36524	RPS15	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g58430.1	LOC_Os03g58430	component RPS15 of SSU proteome	0.05	OrthoFinder output from all 47 species
LOC_Os07g08660.1	LOC_Os07g08660	component RPS15 of SSU proteome	0.09	OrthoFinder output from all 47 species
Len_g14378	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g00451	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_14543g0010	No alias	component RPS15 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_18691g0010	No alias	40S ribosomal protein S15 OS=Picea mariana...	0.04	OrthoFinder output from all 47 species
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.09	OrthoFinder output from all 47 species
Pp3c3_23700V3.1	Pp3c3_23700	Ribosomal protein S19 family protein	0.02	OrthoFinder output from all 47 species
Smo172403	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Solyc02g082000.3.1	RPS15, Solyc02g082000	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species
Solyc09g083370.3.1	RPS15, Solyc09g083370	component RPS15 of SSU proteome	0.06	OrthoFinder output from all 47 species
Spa_g03572	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g04015	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g10752	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e011449_P001	Zm00001e011449	component RPS15 of SSU proteome	0.08	OrthoFinder output from all 47 species
Zm00001e011450_P001	Zm00001e011450	component RPS15 of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e032961_P001	Zm00001e032961	component RPS15 of SSU proteome	0.04	OrthoFinder output from all 47 species

Functional Annotation

GO

Predicted GO

InterPro

Type GO Term Name Evidence Source

MF GO:0003674 molecular_function None Extended

MF GO:0003735 structural constituent of ribosome IEA Interproscan

MF GO:0005198 structural molecule activity None Extended

CC GO:0005575 cellular_component None Extended

CC GO:0005840 ribosome IEA Interproscan

BP GO:0006412 translation IEA Interproscan

BP GO:0006518 peptide metabolic process None Extended

BP GO:0006807 nitrogen compound metabolic process None Extended

BP GO:0008150 biological_process None Extended

BP GO:0008152 metabolic process None Extended

BP GO:0009058 biosynthetic process None Extended

BP GO:0009059 macromolecule biosynthetic process None Extended

BP GO:0009987 cellular process None Extended

BP GO:0019538 protein metabolic process None Extended

BP GO:0034641 cellular nitrogen compound metabolic process None Extended

BP GO:0034645 cellular macromolecule biosynthetic process None Extended

BP GO:0043043 peptide biosynthetic process None Extended

BP GO:0043170 macromolecule metabolic process None Extended

CC GO:0043226 organelle None Extended

CC GO:0043228 non-membrane-bounded organelle None Extended

CC GO:0043229 intracellular organelle None Extended

CC GO:0043232 intracellular non-membrane-bounded organelle None Extended

BP GO:0043603 amide metabolic process None Extended

BP GO:0043604 amide biosynthetic process None Extended

BP GO:0044237 cellular metabolic process None Extended

BP GO:0044238 primary metabolic process None Extended

BP GO:0044249 cellular biosynthetic process None Extended

BP GO:0044260 cellular macromolecule metabolic process None Extended

BP GO:0044271 cellular nitrogen compound biosynthetic process None Extended

BP GO:0071704 organic substance metabolic process None Extended

CC GO:0110165 cellular anatomical entity None Extended

BP GO:1901564 organonitrogen compound metabolic process None Extended

BP GO:1901566 organonitrogen compound biosynthetic process None Extended

BP GO:1901576 organic substance biosynthetic process None Extended

Toggle parental

Type GO Term Name Evidence Source

MF GO:0000166 nucleotide binding IEP HCCA

MF GO:0003676 nucleic acid binding IEP HCCA

MF GO:0003690 double-stranded DNA binding IEP HCCA

MF GO:0003723 RNA binding IEP HCCA

MF GO:0003743 translation initiation factor activity IEP HCCA

MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA

MF GO:0005488 binding IEP HCCA

MF GO:0005515 protein binding IEP HCCA

MF GO:0005524 ATP binding IEP HCCA

CC GO:0005634 nucleus IEP HCCA

BP GO:0006259 DNA metabolic process IEP HCCA

BP GO:0006281 DNA repair IEP HCCA

BP GO:0006298 mismatch repair IEP HCCA

BP GO:0006325 chromatin organization IEP HCCA

BP GO:0006334 nucleosome assembly IEP HCCA

BP GO:0006338 chromatin remodeling IEP HCCA

BP GO:0006413 translational initiation IEP HCCA

BP GO:0006886 intracellular protein transport IEP HCCA

BP GO:0006950 response to stress IEP HCCA

BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA

BP GO:0008104 protein localization IEP HCCA

MF GO:0008135 translation factor activity, RNA binding IEP HCCA

BP GO:0015031 protein transport IEP HCCA

BP GO:0016579 protein deubiquitination IEP HCCA

MF GO:0017076 purine nucleotide binding IEP HCCA

MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA

MF GO:0019843 rRNA binding IEP HCCA

MF GO:0019899 enzyme binding IEP HCCA

BP GO:0022607 cellular component assembly IEP HCCA

MF GO:0030554 adenyl nucleotide binding IEP HCCA

MF GO:0030983 mismatched DNA binding IEP HCCA

MF GO:0031267 small GTPase binding IEP HCCA

MF GO:0032553 ribonucleotide binding IEP HCCA

MF GO:0032555 purine ribonucleotide binding IEP HCCA

MF GO:0032559 adenyl ribonucleotide binding IEP HCCA

BP GO:0033036 macromolecule localization IEP HCCA

BP GO:0033554 cellular response to stress IEP HCCA

BP GO:0034728 nucleosome organization IEP HCCA

MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA

MF GO:0036094 small molecule binding IEP HCCA

MF GO:0043167 ion binding IEP HCCA

MF GO:0043168 anion binding IEP HCCA

BP GO:0043933 protein-containing complex organization IEP HCCA

MF GO:0045182 translation regulator activity IEP HCCA

BP GO:0045184 establishment of protein localization IEP HCCA

BP GO:0046907 intracellular transport IEP HCCA

MF GO:0051020 GTPase binding IEP HCCA

BP GO:0051649 establishment of localization in cell IEP HCCA

BP GO:0051716 cellular response to stimulus IEP HCCA

BP GO:0065003 protein-containing complex assembly IEP HCCA

BP GO:0065004 protein-DNA complex assembly IEP HCCA

BP GO:0070646 protein modification by small protein removal IEP HCCA

BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA

BP GO:0070727 cellular macromolecule localization IEP HCCA

BP GO:0071824 protein-DNA complex subunit organization IEP HCCA

MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA

MF GO:0097159 organic cyclic compound binding IEP HCCA

MF GO:0097367 carbohydrate derivative binding IEP HCCA

MF GO:0101005 deubiquitinase activity IEP HCCA

MF GO:1901265 nucleoside phosphate binding IEP HCCA

MF GO:1901363 heterocyclic compound binding IEP HCCA

InterPro domains Description Start Stop

IPR002222 Ribosomal_S19 73 156

External Links

No external refs found!

Sam_g32727

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation