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  5. Sam_g29536

Sam_g29536


Description : component *(VPS35) of Retromer protein recycling complex & original description: none


Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29536

Target Alias Description ECC score Gene Family Method Actions
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.02 OrthoFinder output from all 47 species
Aob_g02341 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Cre01.g029650 ZIP3, VPS35A Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
Dcu_g44008 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Dde_g10908 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
GSVIVT01009948001 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.04 OrthoFinder output from all 47 species
LOC_Os03g58700.1 VPS35B, LOC_Os03g58700 component VPS35 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
Lfl_g08397 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
MA_102572g0010 VPS35B component VPS35 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
Mp3g20440.1 VPS35B component VPS35 of Retromer protein recycling complex 0.01 OrthoFinder output from all 47 species
Nbi_g11981 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Solyc02g083560.3.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
Zm00001e006031_P002 VPS35B, Zm00001e006031 component VPS35 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
Zm00001e011849_P003 VPS35B, Zm00001e011849 component VPS35 of Retromer protein recycling complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0030906 retromer, cargo-selective complex IEA Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR005378 Vps35 18 754
No external refs found!