Sam_g29317

Description : WRKY-type transcription factor & original description: none

Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g29317

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00145410	ATWRKY50,...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	OrthoFinder output from all 47 species
AMTR_s00089p00116340	WRKY2, ATWRKY2,...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	OrthoFinder output from all 47 species
AT2G46130	WRKY43, ATWRKY43	WRKY DNA-binding protein 43	0.02	OrthoFinder output from all 47 species
AT4G39410	ATWRKY13, WRKY13	WRKY DNA-binding protein 13	0.03	OrthoFinder output from all 47 species
Adi_g039781	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g109927	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g60002	ATWRKY24, WRKY24	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13886	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g27046	WRKY42, AtWRKY42	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene26528.t1	WRKY3, Aspi01Gene26528	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene66845.t1	WRKY42,...	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene66845.t2	WRKY42,...	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g24685	WRKY4	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g25504	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.04G004800.1	ATWRKY71,...	WRKY-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.1Z119500.1	WRKY28,...	WRKY-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.31G073500.1	Ceric.31G073500	not classified & original description: pacid=50574451...	0.02	OrthoFinder output from all 47 species
Dac_g08284	WRKY26	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g29516	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007006001	AtWRKY20, WRKY20	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
GSVIVT01012196001	ATWRKY57, WRKY57	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
GSVIVT01030046001	AtWRKY20, WRKY20	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
Gb_17622	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os01g09080.1	WRKY72,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os01g14440.1	WRKY6, ATWRKY6,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os01g62510.1	ATWRKY57,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os02g53100.1	WRKY9, ATWRKY9,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os05g25770.1	WRKY55,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os05g49100.1	ATWRKY71,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os10g18099.1	WRKY62,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Len_g31732	AtWRKY20, WRKY20	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_101135g0010	No alias	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
MA_10434651g0010	WRKY4	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
MA_164675g0010	WRKY42, AtWRKY42	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
MA_426605g0010	No alias	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Ore_g12131	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25341	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25880	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g26994	WRKY55, ATWRKY55	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g60782	No alias	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g42318	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g05178	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g06236	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g09440	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26717	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g34694	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g50657	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g104550.3.1	WRKY9, ATWRKY9,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc05g053380.4.1	WRKY48,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Solyc09g014990.4.1	WRKY33,...	transcription factor (WRKY). transcription factor (WRKY33)	0.02	OrthoFinder output from all 47 species
Spa_g16109	ATWRKY45, WRKY45	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g37337	ATWRKY45, WRKY45	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e016623_P001	WRKY72,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e020410_P001	WRKY28,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e026554_P001	WRKY31,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e026571_P004	ATWRKY30,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Zm00001e027460_P001	WRKY56,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e029092_P002	ATWRKY24,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e032189_P001	WRKY56,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e032453_P001	WRKY42,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e034150_P001	ATWRKY40,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e035859_P001	WRKY46,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e041656_P001	WRKY26, Zm00001e041656	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	255	310

External Links

No external refs found!

Sam_g29317

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation