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  5. Sam_g29181

Sam_g29181


Description : splicing factor *(SR45a) & original description: none


Gene families : OG0001089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g29181

Target Alias Description ECC score Gene Family Method Actions
Adi_g058897 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07031 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23958 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39794 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11234 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g36805 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37453.t3 Aspi01Gene37453 splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37453.t4 Aspi01Gene37453 splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69430.t1 Aspi01Gene69430 splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69430.t2 Aspi01Gene69430 splicing factor *(SR45a) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12459 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.36G057600.1 Ceric.36G057600 splicing factor *(SR45a) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g32618 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36442 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43173 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08590 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g15180.1 No alias Serine/arginine-rich splicing factor SR45a... 0.01 OrthoFinder output from all 47 species
Pnu_g25241 No alias splicing factor *(SR45a) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38047 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07840 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27155 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 52 121
No external refs found!