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  5. Sam_g28963

Sam_g28963


Description : not classified & original description: none


Gene families : OG0001730 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g28963

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00147p00104660 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G53250 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
Aspi01Gene13943.t1 Aspi01Gene13943 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010108 No alias not classified & original description: CDS=68-1096 0.02 OrthoFinder output from all 47 species
Cba_g60241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01671 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014224001 No alias No description available 0.02 OrthoFinder output from all 47 species
MA_643462g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g11885 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g42536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017240 No alias not classified & original description: CDS=46-1284 0.03 OrthoFinder output from all 47 species
Solyc03g123700.4.1 Solyc03g123700 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e006550_P001 Zm00001e006550 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e032593_P001 Zm00001e032593 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR003611 NUMOD3 187 215
No external refs found!