Sam_g28009

Description : component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex & original description: none

Gene families : OG0004633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004633_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g28009
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
AT2G13540	ATCBP80, ABH1, ENS, CBP80	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Aev_g03353	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.02	OrthoFinder output from all 47 species
Ala_g18568	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.04	OrthoFinder output from all 47 species
Als_g01146	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.02	OrthoFinder output from all 47 species
Aob_g18677	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.02	OrthoFinder output from all 47 species
Aop_g05374	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.03	OrthoFinder output from all 47 species
Ceric.38G051300.1	ATCBP80, ABH1,...	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021589.24	ATCBP80, ABH1, ENS, CBP80	RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA...	0.02	OrthoFinder output from all 47 species
Cre12.g524100	No alias	RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA...	0.04	OrthoFinder output from all 47 species
Dac_g23459	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01037230001	ATCBP80, ABH1, ENS, CBP80	RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA...	0.02	OrthoFinder output from all 47 species
Gb_13655	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.05	OrthoFinder output from all 47 species
LOC_Os03g22570.1	ATCBP80, ABH1,...	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.07	OrthoFinder output from all 47 species
Len_g07985	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.02	OrthoFinder output from all 47 species
Lfl_g02038	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.03	OrthoFinder output from all 47 species
MA_10436272g0010	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.02	OrthoFinder output from all 47 species
MA_13750g0010	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.05	OrthoFinder output from all 47 species
Mp1g05560.1	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.06	OrthoFinder output from all 47 species
Smo115849	ATCBP80, ABH1, ENS, CBP80	RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA...	0.05	OrthoFinder output from all 47 species
Solyc10g005530.3.1	ATCBP80, ABH1,...	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.06	OrthoFinder output from all 47 species
Spa_g26897	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.03	OrthoFinder output from all 47 species
Zm00001e001643_P004	ATCBP80, ABH1,...	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003890	MIF4G-like_typ-3	27	218
IPR015172	MIF4G-like_typ-1	341	416

External Links

No external refs found!

Sam_g28009

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation