Coexpression cluster: Cluster_172 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 17.01% (33/194) 2.42 0.0 0.0
GO:0005488 binding 31.96% (62/194) 1.35 0.0 0.0
GO:0003723 RNA binding 10.31% (20/194) 2.79 0.0 0.0
GO:0090304 nucleic acid metabolic process 8.76% (17/194) 3.13 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 9.79% (19/194) 2.79 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 9.79% (19/194) 2.67 0.0 0.0
GO:0003674 molecular_function 42.78% (83/194) 0.94 0.0 0.0
GO:0046483 heterocycle metabolic process 9.79% (19/194) 2.67 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 9.79% (19/194) 2.64 0.0 0.0
GO:0016070 RNA metabolic process 6.7% (13/194) 3.24 0.0 0.0
GO:1901363 heterocyclic compound binding 20.1% (39/194) 1.49 0.0 0.0
GO:0097159 organic cyclic compound binding 20.1% (39/194) 1.49 0.0 0.0
GO:0006351 DNA-templated transcription 3.09% (6/194) 4.71 0.0 3e-06
GO:0097659 nucleic acid-templated transcription 3.09% (6/194) 4.71 0.0 3e-06
GO:0140640 catalytic activity, acting on a nucleic acid 4.64% (9/194) 3.22 1e-06 1.3e-05
GO:0034654 nucleobase-containing compound biosynthetic process 4.12% (8/194) 3.34 2e-06 2.8e-05
GO:0032774 RNA biosynthetic process 3.09% (6/194) 3.9 3e-06 6e-05
GO:0019438 aromatic compound biosynthetic process 4.12% (8/194) 3.07 6e-06 9.9e-05
GO:0018130 heterocycle biosynthetic process 4.12% (8/194) 3.04 7e-06 0.000107
GO:1901362 organic cyclic compound biosynthetic process 4.12% (8/194) 2.94 1.1e-05 0.000168
GO:0005634 nucleus 3.09% (6/194) 3.54 1.4e-05 0.000202
GO:0005515 protein binding 9.79% (19/194) 1.57 2.6e-05 0.000348
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.55% (3/194) 5.22 7e-05 0.00091
GO:0008168 methyltransferase activity 3.09% (6/194) 3.12 7.3e-05 0.000914
GO:0016741 transferase activity, transferring one-carbon groups 3.09% (6/194) 3.05 9.7e-05 0.001165
GO:0097747 RNA polymerase activity 1.55% (3/194) 4.93 0.000131 0.001453
GO:0034062 5'-3' RNA polymerase activity 1.55% (3/194) 4.93 0.000131 0.001453
GO:0034641 cellular nitrogen compound metabolic process 9.79% (19/194) 1.38 0.000147 0.001569
GO:0006302 double-strand break repair 1.03% (2/194) 6.51 0.000197 0.002029
GO:0006807 nitrogen compound metabolic process 14.43% (28/194) 1.05 0.00021 0.002096
GO:0016779 nucleotidyltransferase activity 2.06% (4/194) 3.74 0.000241 0.002321
GO:0034470 ncRNA processing 2.06% (4/194) 3.72 0.000252 0.002356
GO:0043231 intracellular membrane-bounded organelle 3.09% (6/194) 2.78 0.000269 0.002433
GO:0043227 membrane-bounded organelle 3.09% (6/194) 2.76 0.000281 0.002469
GO:0017056 structural constituent of nuclear pore 1.03% (2/194) 6.1 0.000366 0.003123
GO:0140098 catalytic activity, acting on RNA 2.58% (5/194) 3.01 0.000421 0.003496
GO:0006396 RNA processing 2.58% (5/194) 2.99 0.000444 0.003588
GO:0043170 macromolecule metabolic process 12.89% (25/194) 1.02 0.000611 0.004688
GO:0044238 primary metabolic process 14.95% (29/194) 0.93 0.000604 0.004752
GO:0006364 rRNA processing 1.55% (3/194) 4.04 0.000826 0.006026
GO:0016072 rRNA metabolic process 1.55% (3/194) 4.04 0.000826 0.006026
GO:0003677 DNA binding 4.12% (8/194) 1.99 0.001026 0.007305
GO:0071704 organic substance metabolic process 14.95% (29/194) 0.87 0.001189 0.008265
GO:0005643 nuclear pore 1.03% (2/194) 5.1 0.001537 0.010444
GO:0034660 ncRNA metabolic process 2.06% (4/194) 2.92 0.002034 0.013513
GO:0006259 DNA metabolic process 2.06% (4/194) 2.8 0.002711 0.017622
GO:0009187 cyclic nucleotide metabolic process 0.52% (1/194) 8.1 0.003649 0.020981
GO:0000120 RNA polymerase I transcription regulator complex 0.52% (1/194) 8.1 0.003649 0.020981
GO:0009190 cyclic nucleotide biosynthetic process 0.52% (1/194) 8.1 0.003649 0.020981
GO:0006360 transcription by RNA polymerase I 0.52% (1/194) 8.1 0.003649 0.020981
GO:0006189 'de novo' IMP biosynthetic process 0.52% (1/194) 8.1 0.003649 0.020981
GO:0009360 DNA polymerase III complex 0.52% (1/194) 8.1 0.003649 0.020981
GO:0044237 cellular metabolic process 11.86% (23/194) 0.87 0.003932 0.022183
GO:0009987 cellular process 14.95% (29/194) 0.74 0.00429 0.023324
GO:0008152 metabolic process 14.95% (29/194) 0.74 0.004265 0.023616
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0.52% (1/194) 7.1 0.007285 0.03513
GO:0000228 nuclear chromosome 0.52% (1/194) 7.1 0.007285 0.03513
GO:0140664 ATP-dependent DNA damage sensor activity 0.52% (1/194) 7.1 0.007285 0.03513
GO:0140612 DNA damage sensor activity 0.52% (1/194) 7.1 0.007285 0.03513
GO:0030490 maturation of SSU-rRNA 0.52% (1/194) 7.1 0.007285 0.03513
GO:0031491 nucleosome binding 0.52% (1/194) 7.1 0.007285 0.03513
GO:0140513 nuclear protein-containing complex 1.55% (3/194) 2.96 0.007006 0.037408
GO:0004386 helicase activity 1.03% (2/194) 3.81 0.008982 0.042628
GO:0055076 transition metal ion homeostasis 0.52% (1/194) 6.51 0.010907 0.046588
GO:0030515 snoRNA binding 0.52% (1/194) 6.51 0.010907 0.046588
GO:0005384 manganese ion transmembrane transporter activity 0.52% (1/194) 6.51 0.010907 0.046588
GO:0046916 cellular transition metal ion homeostasis 0.52% (1/194) 6.51 0.010907 0.046588
GO:0030026 cellular manganese ion homeostasis 0.52% (1/194) 6.51 0.010907 0.046588
GO:0055071 manganese ion homeostasis 0.52% (1/194) 6.51 0.010907 0.046588
GO:0042575 DNA polymerase complex 0.52% (1/194) 6.51 0.010907 0.046588
GO:0008150 biological_process 18.56% (36/194) 0.55 0.011916 0.049483
GO:0006338 chromatin remodeling 1.03% (2/194) 3.61 0.01183 0.049818
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_151 0.023 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_187 0.016 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_394 0.017 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_123 0.015 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_6 0.021 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_26 0.02 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_45 0.015 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_71 0.033 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_96 0.028 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_121 0.018 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_141 0.024 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_137 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_205 0.017 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_211 0.017 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_48 0.022 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_49 0.018 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_53 0.015 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_283 0.026 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_329 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_9 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_19 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_22 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_37 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_39 0.019 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_42 0.025 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_69 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_75 0.028 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_76 0.019 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_86 0.022 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_110 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_127 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_130 0.028 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_139 0.019 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_99 0.015 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_111 0.017 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_241 0.024 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_263 0.017 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_75 0.02 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_12 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_53 0.057 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_75 0.043 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_81 0.027 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_121 0.045 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_112 0.025 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_117 0.027 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_154 0.023 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_18 0.017 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_57 0.053 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_170 0.016 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_175 0.022 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_184 0.026 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_195 0.021 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_21 0.024 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_23 0.018 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_64 0.016 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_157 0.016 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_35 0.026 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_54 0.028 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_79 0.019 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_100 0.021 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_16 0.021 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_41 0.026 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_44 0.021 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_61 0.017 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_98 0.017 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_88 0.033 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_9 0.02 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_54 0.017 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_10 0.017 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_12 0.017 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_41 0.045 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_56 0.03 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_64 0.016 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_74 0.018 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_12 0.016 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_15 0.017 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_25 0.017 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_153 0.017 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_169 0.018 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_40 0.019 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_118 0.035 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.041 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_60 0.036 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_61 0.02 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_130 0.03 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_131 0.024 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_223 0.027 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_225 0.018 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_262 0.021 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_29 0.034 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_32 0.018 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_41 0.027 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_107 0.022 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_111 0.019 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_124 0.018 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_146 0.028 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_173 0.034 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_181 0.021 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_1 0.032 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_2 0.016 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_4 0.018 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_22 0.015 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_29 0.02 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_40 0.018 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_48 0.021 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_55 0.018 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_19 0.049 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_21 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_74 0.034 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_130 0.018 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_155 0.033 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_64 0.022 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_82 0.021 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_8 0.035 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_56 0.026 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_57 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_84 0.033 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_15 0.017 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_73 0.042 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_141 0.017 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_30 0.037 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_66 0.016 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_75 0.039 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_95 0.032 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_109 0.019 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_59 0.018 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_71 0.022 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_119 0.02 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_137 0.015 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_183 0.034 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_18 0.025 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_65 0.032 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_68 0.015 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_86 0.018 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_97 0.016 OrthoFinder output from all 47 species Compare
Sequences (194) (download table)

InterPro Domains

GO Terms

Family Terms