Lfl_g28117


Description : E3 ubiquitin ligase *(PIRE) & original description: none


Gene families : OG0001463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g28117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00074p00034110 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AT3G48070 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g096124 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08607 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g57349 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30181.t1 Aspi01Gene30181 E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058742 No alias E3 ubiquitin ligase *(PIRE) & original description: CDS=1-579 0.04 OrthoFinder output from all 47 species
Cba_g29244 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g37030.1 LOC_Os02g37030 RING-C2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os04g38970.2 LOC_Os04g38970 RING-C2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Len_g11910 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08932 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15078 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01110 No alias E3 ubiquitin ligase *(PIRE) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015303 No alias E3 ubiquitin ligase *(PIRE) & original description: CDS=420-1622 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!