Sam_g27144

Description : component *(CASC3) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g27144
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AT1G15280	No alias	CASC3/Barentsz eIF4AIII binding	0.05	OrthoFinder output from all 47 species
Adi_g004430	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g074719	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Aev_g20399	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Als_g23070	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Als_g57002	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Aob_g14440	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Aop_g13512	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Ceric.15G073300.1	Ceric.15G073300	component *(CASC3) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Ceric.26G046100.1	Ceric.26G046100	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Dcu_g14577	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
LOC_Os01g41190.2	LOC_Os01g41190	component CASC3 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
LOC_Os05g45830.1	LOC_Os05g45830	component CASC3 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Lfl_g07367	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
MA_10431738g0010	No alias	component CASC3 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Mp8g03760.1	No alias	component CASC3 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Msp_g16058	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ore_g02704	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g37838	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Pir_g66513	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Ppi_g32199	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003000	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Solyc12g042990.3.1	Solyc12g042990	component CASC3 of RNA quality control Exon Junction complex	0.04	OrthoFinder output from all 47 species
Tin_g04726	No alias	component *(CASC3) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Zm00001e020605_P001	Zm00001e020605	component CASC3 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Zm00001e027475_P001	Zm00001e027475	component CASC3 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0035145	exon-exon junction complex	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0030527	structural constituent of chromatin	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018545	Btz_dom	115	200

External Links

No external refs found!

Sam_g27144

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation