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  5. Sam_g27060

Sam_g27060


Description : poly(A) RNA polymerase & original description: none


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g27060

Target Alias Description ECC score Gene Family Method Actions
AT5G02670 No alias BEST Arabidopsis thaliana protein match is: poly(A)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28614.t2 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28614.t3 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0209.g058047 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=403-2583 0.02 OrthoFinder output from all 47 species
Cba_g62706 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G071900.1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g10140.1 PAPS1 poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Msp_g00979 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13197 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17949 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22121 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005199_P002 PAPS1, Zm00001e005199 poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e030659_P006 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e037202_P005 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007012 PolA_pol_cen_dom 130 473
IPR007010 PolA_pol_RNA-bd_dom 477 534
IPR007010 PolA_pol_RNA-bd_dom 535 608
IPR002934 Polymerase_NTP_transf_dom 200 284
No external refs found!