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  5. Sam_g26420

Sam_g26420


Description : DNA primase and helicase *(TWINKLE) & original description: none


Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g26420

Target Alias Description ECC score Gene Family Method Actions
Aev_g01337 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g14823 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55000.t1 Aspi01Gene55000 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z069600.1 Ceric.1Z069600 DNA primase and helicase *(TWINKLE) & original... 0.02 OrthoFinder output from all 47 species
Cre12.g503150 No alias Twinkle homolog protein, chloroplastic/mitochondrial... 0.01 OrthoFinder output from all 47 species
Dac_g27544 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g40449 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426722g0010 No alias Twinkle homolog protein, chloroplastic/mitochondrial... 0.02 OrthoFinder output from all 47 species
MA_21134g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g12970.1 No alias DNA primase and helicase (TWINKLE) 0.02 OrthoFinder output from all 47 species
Ore_g22672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40063 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e030349_P002 Zm00001e030349 DNA primase and helicase (TWINKLE) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032039 integrator complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140223 general transcription initiation factor activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 228 320
No external refs found!